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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027508m | ||||||||
Common Name | CICLE_v10027508mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 227aa MW: 24895.5 Da PI: 6.534 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 180.5 | 1.5e-56 | 17 | 112 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+eg Ciclev10027508m 17 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEG 110 79******************************************************************************************** PP NF-YB 96 ek 97 ek Ciclev10027508m 111 EK 112 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-55 | 14 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.73E-42 | 19 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-27 | 22 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-19 | 50 | 68 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 53 | 69 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.1E-19 | 69 | 87 | No hit | No description |
PRINTS | PR00615 | 1.1E-19 | 88 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
NQTSPIGSPT SGNISDKEQD RFLPIANVSR IMKKSLPANA KISKEAKETV QECVSEFISF 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKI YLNKYRETEG EKNSMARQED 120 QAANPNPSHA AAAEINKANN SFSSSDNKAD FQNFNMGFYS LGAQVAPNSN GEGTRVMGYG 180 ENLGVEAFNL SRIYDNRDGN GGNRSAMAAH YNYCLLKFSF SAFTYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-48 | 17 | 107 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-48 | 17 | 107 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428057.1 | 1e-169 | hypothetical protein CICLE_v10027508mg, partial | ||||
Swissprot | O23310 | 7e-66 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | V4SKW9 | 1e-169 | V4SKW9_9R | ||||
STRING | POPTR_0005s08510.1 | 9e-94 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20563 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 7e-67 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027508m |
Entrez Gene | 18036966 |