PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027508m

Common Name

CICLE_v10027508mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YB

Protein Properties

Length: 227aa MW: 24895.5 Da PI: 6.534

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027508m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	180.5	1.5e-56	17	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+eg Ciclev10027508m 17 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEG 110 79******************************************************************************************** PP NF-YB 96 ek 97 ek Ciclev10027508m 111 EK 112 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-55	14	140	IPR009072	Histone-fold
SuperFamily	SSF47113	9.73E-42	19	131	IPR009072	Histone-fold
Pfam	PF00808	2.0E-27	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-19	50	68	No hit	No description
PROSITE pattern	PS00685	0	53	69	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-19	69	87	No hit	No description
PRINTS	PR00615	1.1E-19	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
NQTSPIGSPT SGNISDKEQD RFLPIANVSR IMKKSLPANA KISKEAKETV QECVSEFISF 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKI YLNKYRETEG EKNSMARQED 120 QAANPNPSHA AAAEINKANN SFSSSDNKAD FQNFNMGFYS LGAQVAPNSN GEGTRVMGYG 180 ENLGVEAFNL SRIYDNRDGN GGNRSAMAAH YNYCLLKFSF SAFTYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-48	17	107	2	92	Transcription factor HapC (Eurofung)
4g92_B	4e-48	17	107	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428057.1	1e-169	hypothetical protein CICLE_v10027508mg, partial
Swissprot	O23310	7e-66	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	V4SKW9	1e-169	V4SKW9_9R
STRING	POPTR_0005s08510.1	9e-94	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20563	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-67	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Ciclev10027508m
Entrez Gene	18036966